Package fr.ens.biologie.genomique.aozan.tests.pooledsample

Interface PooledSampleTest

All Superinterfaces:

AozanTest

All Known Implementing Classes:

AbstractPooledSampleTest, AbstractSimpleSampleTest, FastQScreenMappedExceptRefPercentPooledSampleTest, FastQScreenMappedPercentPooledSampleTest, FastQScreenReportPooledSampleTest, FastQScreenSampleOvercontaminationCountPooledSampleTest, GenomeNamesPooledSampleTest, InProjectPercentPooledSampleTest, InRunPercentPooledSampleTest, IsIndexedPooledSampleTest, LaneCountPooledSampleTest, MaxPFClusterCountPooledSampleTest, MaxRawClusterCountPooledSampleTest, MinPFClusterCountPooledSampleTest, MinRawClusterCountPooledSampleTest, PFBaseMeanQualityScorePooledSampleTest, PFClusterCountPooledSampleTest, PFClusterRecoveryCountPooledSampleTest, PFPercentPooledSampleTest, Q30PercentPooledSampleTest, RawClusterCountPooledSampleTest, RawClusterRecoveryCountPooledSampleTest, RecoverablePFClusterPercentPooledSampleTest, RecoverableRawClusterPercentPooledSampleTest, SampleCountPooledSampleTest, SampleInPoolCountPooledSampleTest

public interface PooledSampleTest
extends AozanTest

This interface define a test on a pooled sample.

Since:

1.3

Author:

Laurent Jourdren

Method Summary

Modifier and Type	Method	Description
TestResult	test(RunData data, int pooledSampleId)	Do a test.

Methods inherited from interface fr.ens.biologie.genomique.aozan.tests.AozanTest

configure, getCollectorsNamesRequiered, getColumnName, getDescription, getName, getUnit, init

Method Details

test

TestResult test(RunData data,
 int pooledSampleId)

Do a test.

Parameters:

data - result object

pooledSampleId - pooled sample Id

Returns:

a TestResult object with the result of the test