Uses of Interface
fr.ens.biologie.genomique.eoulsan.checkers.Checker

Packages that use Checker

Package	Description
fr.ens.biologie.genomique.eoulsan.checkers	This package contains and define checkers of DataFormat.
fr.ens.biologie.genomique.eoulsan.core	This package contains Eoulsan workflow core class.
fr.ens.biologie.genomique.eoulsan.core.workflow	This package contains Eoulsan workflow dedicated classes.
fr.ens.biologie.genomique.eoulsan.data	This package contains classes for data files, data types and data formats.
fr.ens.biologie.genomique.eoulsan.modules	This package define the steps for the Eoulsan workflow.
fr.ens.biologie.genomique.eoulsan.modules.diffana	This package contain all the classes related to the differential analysis step.

Uses of Checker in fr.ens.biologie.genomique.eoulsan.checkers

Classes in fr.ens.biologie.genomique.eoulsan.checkers that implement Checker

Modifier and Type	Class	Description
class	DESeq2DesignChecker	This class define a Checker on the design for DESeq2 analyzes.
class	GenomeChecker	This class define a Checker on genome FASTA files.
class	GFFChecker	This class define a Checker on GFF annotation.
class	GTFChecker	This class define a Checker on GTF annotation.
class	ReadsChecker	This class define a checker on FASTQ files.

Uses of Checker in fr.ens.biologie.genomique.eoulsan.core

Methods in fr.ens.biologie.genomique.eoulsan.core that return Checker

Modifier and Type	Method	Description
Checker	Module.getChecker()	Get the checker for the module
Checker	Step.getChecker()	Get Checker.

Uses of Checker in fr.ens.biologie.genomique.eoulsan.core.workflow

Methods in fr.ens.biologie.genomique.eoulsan.core.workflow that return Checker

Modifier and Type	Method	Description
Checker	AbstractStep.getChecker()

Uses of Checker in fr.ens.biologie.genomique.eoulsan.data

Methods in fr.ens.biologie.genomique.eoulsan.data that return Checker

Modifier and Type	Method	Description
Checker	DataFormat.getChecker()	Get the checker needed to check data of this type.
Checker	MapperIndexDataFormat.getChecker()
Checker	XMLDataFormat.getChecker()

Uses of Checker in fr.ens.biologie.genomique.eoulsan.modules

Methods in fr.ens.biologie.genomique.eoulsan.modules that return Checker

Modifier and Type	Method	Description
Checker	AbstractModule.getChecker()

Uses of Checker in fr.ens.biologie.genomique.eoulsan.modules.diffana

Methods in fr.ens.biologie.genomique.eoulsan.modules.diffana that return Checker

Modifier and Type	Method	Description
Checker	DESeq2Module.getChecker()