Uses of Annotation Interface
fr.ens.biologie.genomique.eoulsan.annotations.HadoopCompatible

Packages that use HadoopCompatible

Package	Description
fr.ens.biologie.genomique.eoulsan.data.protocols	This package contains class for protocols used by the DataFile classes.
fr.ens.biologie.genomique.eoulsan.modules.expression	This package contain all the classes related to the expression step.
fr.ens.biologie.genomique.eoulsan.modules.fastqc	This package contain all the classes related to FastQC.
fr.ens.biologie.genomique.eoulsan.modules.mapping.local	This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in local mode.
fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload	This package contain classes related to upload data to HDFS and Cloud.

Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.data.protocols

Classes in fr.ens.biologie.genomique.eoulsan.data.protocols with annotations of type HadoopCompatible

Modifier and Type	Class	Description
class	AdditionalAnnotationDataProtocol	This class define a additional annotation protocol.
class	AnnotationDataProtocol	This class define a annotation protocol.
class	FileDataProtocol	This class implements a File Protocol.
class	GenomeDataProtocol	This class define a genome protocol.
class	GFFDataProtocol	This class define a annotation protocol.
class	GTFDataProtocol	This class define a annotation protocol.

Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.modules.expression

Classes in fr.ens.biologie.genomique.eoulsan.modules.expression with annotations of type HadoopCompatible

Modifier and Type	Class	Description
class	ExpressionResultsAnnotationModule	This class define a module that create annotated expression files in TSV, ODS or XLSX format.

Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.modules.fastqc

Classes in fr.ens.biologie.genomique.eoulsan.modules.fastqc with annotations of type HadoopCompatible

Modifier and Type	Class	Description
class	FastQCModule	This class define a module that compute QC report using FastQC.

Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.modules.mapping.local

Classes in fr.ens.biologie.genomique.eoulsan.modules.mapping.local with annotations of type HadoopCompatible

Modifier and Type	Class	Description
class	BAM2SAMLocalModule	This class define a module for converting BAM files into SAM.
class	Splice2BEDModule	This class define a module for converting SAM files into BED.
class	SplitReadsModule	This class define a module for reads splitting.

Uses of HadoopCompatible in fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload

Classes in fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload with annotations of type HadoopCompatible

Modifier and Type	Class	Description
class	DefineDataFormatToDownload	This Step allow to define the list of the formats of the files to download at the end of a Hadoop execution.