Uses of Package
fr.ens.biologie.genomique.eoulsan.modules.mapping
Packages that use fr.ens.biologie.genomique.eoulsan.modules.mapping
Package
Description
This package contain all the classes related to the mapping (reads filtering, mapping and
alignments filtering) step.
This package contain all the classes related to the mapping (reads filtering, mapping and
alignments filtering) step in hadoop mode.
This package contain all the classes related to the mapping (reads filtering, mapping and
alignments filtering) step in local mode.
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Classes in fr.ens.biologie.genomique.eoulsan.modules.mapping used by fr.ens.biologie.genomique.eoulsan.modules.mappingClassDescriptionThis enum define the names of the counters of the steps of this package.
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Classes in fr.ens.biologie.genomique.eoulsan.modules.mapping used by fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoopClassDescriptionThis class define an abstract module for read filtering, mapping and alignments filtering.This class define an abstract module for read filtering.This class define an abstract module for read mapping.This class define a module for converting SAM files into BAM.This class define an abstract module for alignments filtering.
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Classes in fr.ens.biologie.genomique.eoulsan.modules.mapping used by fr.ens.biologie.genomique.eoulsan.modules.mapping.localClassDescriptionThis class define a module for converting BAM files into SAM.This class define an abstract module for read filtering.This class define an abstract module for read mapping.This class define a module for converting SAM files into BAM.This class define a module for converting SAM files into BAM.This class define an abstract module for alignments filtering.This class define a module for converting SAM files into BED.