End run discovering step

This step tests if a run is completed by checking if a file called Basecalling_Netcopy_complete_ReadX.txt exists at the root of the run output directory where X is the maximal read number of the run (e.g. for an indexed paired end run, X is equals to 3).

Configuration parameters

The following table contains the parameters used for this step.

Aozan property Type Default value Description
hiseq.step boolean True Enables the step, checks all Hiseq or NextSeq run through all run data path directories.
hiseq.step.end.email.template string Not set Path of the email template for the end of the end run step.

Here is an example of email sent at the end of a sequencer run.

  • Example on HiSeq 1500

    example of mail sent at the end of a run