SplitReads module

This module allow to split reads into smaller reads.

  • Internal name: splitreads
  • Available: Both local and distributed mode

  • Input port:
    • input: reads in FASTQ format (format: reads_fastq)

  • Output port:
    • output: reads in FASTQ format (format: reads_fastq)

  • Optional parameters:
    • Parameter Type Description Default value
    split.length integer Length of the splitted reads 100

  • Configuration example:
    • <!-- MultiQC step -->
<step id="mysplitreadsstep" skip="false" discardoutput="false">
        <module>splitreads</module>
        <parameters>
                <parameter>
                        <name>split.length</name>
                        <value>50</value>
                </parameter>
        </parameters>
</step>