Uses of Package
fr.ens.biologie.genomique.eoulsan.annotations
Packages that use fr.ens.biologie.genomique.eoulsan.annotations
Package
Description
This package define the annotations on Eoulsan classes plug-ins.
This package contains Eoulsan workflow dedicated classes.
This package contains class for protocols used by the
DataFile classes.This package define the steps for the Eoulsan workflow.
This packages contains the ChIP-Seq modules.
This packages contains the peak-calling modules.
This packages contains all the quality check modules for ChIP-Seq.
This package contain all the classes related to the differential analysis step.
This package contain all the classes related to the expression step.
This package contain all the classes related to the expression step in hadoop mode.
This package contain all the classes related to the expression step in local mode.
This package contain all the classes related to FastQC.
This package contain generator steps.
This package contain all the classes related to the mapping (reads filtering, mapping and
alignments filtering) step in hadoop mode.
This package contain all the classes related to the mapping (reads filtering, mapping and
alignments filtering) step in local mode.
This package contain classes related data management in Hadoop mode.
This package contain classes related to upload data to HDFS and Cloud.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.data.protocolsClassDescriptionThis annotation is used to mark a plug-in class as usable in hadoop mode and local mode.This annotation is used to mark a plug-in class as usable in hadoop mode only.This annotation is used to mark a plug-in class as usable in local mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modulesClassDescriptionThis annotation is used to mark a plug-in class as usable in local mode only.This annotation is used to mark a step class that requires no log.This annotation is used to mark a step class that requires no output directory.This annotation is used to mark a step class that requires the all the previous step in the workflow file.This annotation is used to mark a module class that can reuse a module instance for each task.This annotation is used to mark a step class that is a terminal step.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.chipseqClassDescriptionThis annotation is used to mark a plug-in class as usable in local mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcallingClassDescriptionThis annotation is used to mark a plug-in class as usable in local mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.chipseq.qcClassDescriptionThis annotation is used to mark a plug-in class as usable in local mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.diffanaClassDescriptionThis annotation is used to mark a plug-in class as usable in local mode only.This annotation is used to mark a step class that requires the all the previous step in the workflow file.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.expressionClassDescriptionThis annotation is used to mark a plug-in class as usable in hadoop mode and local mode.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.expression.hadoopClassDescriptionThis annotation is used to mark a plug-in class as usable in hadoop mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.expression.localClassDescriptionThis annotation is used to mark a plug-in class as usable in local mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.fastqcClassDescriptionThis annotation is used to mark a plug-in class as usable in hadoop mode and local mode.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoopClassDescriptionThis annotation is used to mark a plug-in class as usable in hadoop mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.mapping.localClassDescriptionThis annotation is used to mark a plug-in class as usable in hadoop mode and local mode.This annotation is used to mark a plug-in class as usable in local mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoopClassDescriptionThis annotation is used to mark a plug-in class as usable in hadoop mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.mgmt.uploadClassDescriptionThis annotation is used to mark a plug-in class as usable in hadoop mode and local mode.This annotation is used to mark a plug-in class as usable in hadoop mode only.This annotation is used to mark a plug-in class as usable in local mode only.This annotation is used to mark a step class that is a terminal step.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.multiqcClassDescriptionThis annotation is used to mark a plug-in class as usable in local mode only.
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Classes in fr.ens.biologie.genomique.eoulsan.annotations used by fr.ens.biologie.genomique.eoulsan.modules.singlecellClassDescriptionThis annotation is used to mark a plug-in class as usable in local mode only.