Uses of Package
fr.ens.biologie.genomique.eoulsan
Packages that use fr.ens.biologie.genomique.eoulsan
Package
Description
Root package of Eoulsan.
This package contains and define checkers of DataFormat.
This package contains Eoulsan workflow core class.
This package contains classes for schedulers.
This package contains classes for cluster schedulers.
This package contains Eoulsan workflow dedicated classes.
This package contains classes for data files, data types and data formats.
This package contains classes to handle experimental designs.
This package contain classes related to read tool xml file from galaxy.
This package contain classes related to parameter extractions from XML Galaxy tool xml files.
This package define the steps for the Eoulsan workflow.
This packages contains the ChIP-Seq modules.
This packages contains the peak-calling modules.
This packages contains all the quality check modules for ChIP-Seq.
This package contain all the classes related to the differential analysis step.
This package contain all the classes related to the expression step.
This package contain all the classes related to the expression step in hadoop mode.
This package contain all the classes related to FastQC.
This package contain generator steps.
This package contain all the classes related to the mapping (reads filtering, mapping and
alignments filtering) step.
This package contain all the classes related to the mapping (reads filtering, mapping and
alignments filtering) step in hadoop mode.
This package contain all the classes related to the mapping (reads filtering, mapping and
alignments filtering) step in local mode.
This package contain classes related data management in Hadoop mode.
This package contain classes related to upload data to HDFS and Cloud.
This package contains requirement classes for Eoulsan.
This package contains splitter and merger used when running Eoulsan on a standard cluster to get
more parallelization efficiency.
This package contain utility classes.
This package contains utility classes for hadoopS.
This package contain an advanced multi JVM lock system.
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsanClassDescriptionThis class define an abstract EoulsanRuntime.This Enum define the Eoulsan execution mode.A nestable Eoulsan exception.A nestable Eoulsan exception.This class define the Runtime to execute low level IO operation for Eoulsan in Hadoop mode.This class define an info.This class define the Runtime to execute low level IO operation for Eoulsan in local mode.This class is the main class.This class define a settings class.
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.checkers
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.coreClassDescriptionThis class define an abstract EoulsanRuntime.A nestable Eoulsan exception.This class define a settings class.
-
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.core.schedulers.clustersClassDescriptionA nestable Eoulsan exception.This class define a settings class.
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.core.workflowClassDescriptionThis class define an abstract EoulsanRuntime.A nestable Eoulsan exception.This class define a settings class.
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.data
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.design
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.galaxytools
-
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.modules
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.requirements
-
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.util
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.util.hadoop
-
Classes in fr.ens.biologie.genomique.eoulsan used by fr.ens.biologie.genomique.eoulsan.util.locker